Structure and function prediction of arsenate reductase from Deinococcus indicus DR1.

Author(s) Chauhan, D.; Srivastava, P.A.; Agnihotri, V.; Yennamalli, R.M.; Priyadarshini, R.
Journal J Mol Model
Date Published 2019 Jan 04
Abstract

Arsenic prevalence in the environment impelled many organisms to develop resistance over the course of evolution. Tolerance to arsenic, either as the pentavalent [As(V)] form or the trivalent form [As(III)], by bacteria has been well studied in prokaryotes, and the mechanism of action is well defined. However, in the rod-shaped arsenic tolerant Deinococcus indicus DR1, the key enzyme, arsenate reductase (ArsC) has not been well studied. ArsC of D. indicus belongs to the Grx-linked prokaryotic arsenate reductase family. While it shares homology with the well-studied ArsC of Escherichia coli having a catalytic cysteine (Cys 12) and arginine triad (Arg 60, 94, and 107), the active site of D.indicus ArsC contains four residues Glu 9, Asp 53, Arg 86, and Glu 100, and with complete absence of structurally equivalent residue for crucial Cys 12. Here, we report that the mechanism of action of ArsC of D. indicus is different as a result of convergent evolution and most likely able to detoxify As(V) using a mix of positively- and negatively-charged residues in its active site, unlike the residues of E. coli. This suggests toward the possibility of an alternative mechanism of As (V) degradation in bacteria.

DOI 10.1007/s00894-018-3885-3
Keywords Amino Acid Sequence; Amino Acids; Arsenate Reductases; Arsenic; Bacterial Proteins; Catalytic Domain; Deinococcus; Molecular Dynamics Simulation; Phylogeny; Protein Binding; Protein Domains; Sequence Homology, Amino Acid
ISSN 0948-5023
Citation Chauhan D, Srivastava PA, Agnihotri V, Yennamalli RM, Priyadarshini R. Structure and function prediction of arsenate reductase from Deinococcus indicus DR1. J Mol Model. 2019;25(1):15.

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